To set correct system variable values is the essential step to get the correct server behavior against the workload.  

In MySQL we have many System variables that can be changed at runtime, most of them can be set at session or at global scope. small things

To change the value of a system variable at global level in the past user need to have SUPER privileges. Once the system variable value is modified as global, the server will change his behavior for the session, and obviously as global scope. For instance, one of the most commonly adjusted variables is probably max_connections. If you have max_connection=100 in your my.cnf or as default value, and during the day as DBA you notice that the number of them is not enough, it is easy just to add new connections on the fly, the command:

SET GLOBAL MAX_CONNECTIONS=500;

Will do the work. But here is the issue. We had changed a GLOBAL value, that apply to the whole server, but this change is ephemeral and if the server restarts the setting is lost. In the past I have seen many times servers with different configurations between my.cnf and current Server settings. To prevent this or at least keep it under control good DBAs had develop scripts to checks if and where the differences exists and fix it. The main issue is that very often, we forget to update the configuration file while doing the changes, or we do on purpose to do "Fine tuning first” and forgot after.

What's new in MySQL8 about that? Well we have a couple of small changes. First of all, the privileges, as for MySQL8 user can have SYSTEM_VARIABLES_ADMIN or SUPER to modify the GLOBAL system variables. The other news is related to the ability to have GLOBAL changes to variable to PERSIST on disk and finally to know who did it and when. The new option for SET command is PERSIST. So, if I have:

(root@localhost) [(none)]>show global variables like 'max_connections';
+-----------------+-------+
| Variable_name   | Value |
+-----------------+-------+
| max_connections | 1500  |
+-----------------+-------+

and I want to change the value of max_connection and be sure this value is reloaded at restart, I will do:

(root@localhost) [(none)]>set PERSIST max_connections=150;

(root@localhost) [(none)]>show global variables like 'max_connections';
+-----------------+-------+
| Variable_name   | Value |
+-----------------+-------+
| max_connections | 150   |
+-----------------+-------+

With the usage of PERSIST, MySQL will write the information related to: - key (variable name) - value - timestamp (including microseconds) - user - host A new file in the data directory: mysqld-auto.cnf contains the information The file is in Json format and will have the following:

{ "Version" : 1 , "mysql_server" : {
 "max_connections" : { 
"Value" : "150" , "Metadata" : {
 "Timestamp" : 1565363808318848 , "User" : "root" , "Host" : "localhost" 
} } } }

The information is also in Performance Schema:

select a.VARIABLE_NAME,b.VARIABLE_value ,SET_TIME,SET_USER,SET_HOST  
    from performance_schema.variables_info a 
        join performance_schema.global_variables b 
        on a.VARIABLE_NAME=b.VARIABLE_NAME  
    where b.VARIABLE_NAME like 'max_connections'\G

*************************** 1. row ***************************
 VARIABLE_NAME: max_connections
VARIABLE_value: 150
      SET_TIME: 2019-08-09 11:16:48.318989
      SET_USER: root
      SET_HOST: localhost

As you see the information present, report who did the change, from where, when, and the value. Unfortunately, there is no history here, but this can be easily implemented. To clear the PERSIST settings, run RESET PERSIST and all the Persistent setting will be removed. To be clear if you have:

{ "Version" : 1 , "mysql_server" : {
  "max_connections" : { "Value" : "151" , "Metadata" : { "Timestamp" : 1565367524946371 , "User" : "root" , "Host" : "localhost" } } , 
  "wait_timeout" : { "Value" : "151" , "Metadata" : { "Timestamp" : 1565368154036275 , "User" : "root" , "Host" : "localhost" } } 
} }

RESET PERSISTE will do:

{ "Version" : 1 , "mysql_server" : {  }

Which is removing ALL THE SETTINGS not just one.

Anyhow why is this a good thing to have?

First because we have no excuse now, when we change a variable, we have all the tools needed to make sure we will have it up at startup if this is the intention of the change.

Second is good because storing the information in a file, and not only showing it from PS, allow us to include such information in any automation tool we have.
This in the case we decide to take action or just to keep track of it, like comparison with my.cnf and fixing the discrepancies automatically also at service down or when cloning.


On this let me say that WHILE you can change the value in the file mysqld-auto.cnf, and have the server at restart use that value as the valid one.
This is not recommended, instead please fix the my.cnf and remove the information related to PERSIST.
To touch that file is also dangerous because if you do stupid things like removing a double quote or in any way affecting the Json format, the server will not start, but there will be NO error in the log.

{ "Version" : 1 , "mysql_server" : { "wait_timeout": { "Value : "150" , "Metadata" : { "Timestamp" : 1565455891278414, "User" : "root" , "Host" : "localhost" } } } }
                                                           ^^^ missing double quote 
tusa@tusa-dev:/opt/mysql_templates/mysql-8.0.17futex$ ps aux|grep 8113
tusa      8119  0.0  0.0  14224   896 pts/1    S+   12:54   0:00 grep --color=auto 8113
[1]+  Exit 1                  bin/mysqld --defaults-file=./my.cnf

I have opened a bug for this (https://bugs.mysql.com/bug.php?id=96501).

A short deep dive in the code (you can jump it if you don't care)

The new feature is handled in the files <source>/sql/persisted_variable.(h/cc) The new structure dealing with the PERSIST actions is:

struct st_persist_var {
  std::string key;
  std::string value;
  ulonglong timestamp;
  std::string user;
  std::string host;
  bool is_null;
  st_persist_var();
  st_persist_var(THD *thd);
  st_persist_var(const std::string key, const std::string value,
                 const ulonglong timestamp, const std::string user,
                 const std::string host, const bool is_null);
};

And the main steps are in the constructors st_persist_var. About that, should be noted that when creating the timestamp the code is generating a value that is NOT fully compatible with the MySQL functions FROM_UNIXTIME. The code assigning the timestamp value pass/assign also the microseconds passing them from the timeval (tv) structure:

st_persist_var::st_persist_var(THD *thd) {
  timeval tv = thd->query_start_timeval_trunc(DATETIME_MAX_DECIMALS);
  timestamp = tv.tv_sec * 1000000ULL + tv.tv_usec;
  user = thd->security_context()->user().str;
  host = thd->security_context()->host().str;
  is_null = false;
}

Where:

    tv.tv_sec = 1565267482
    tv.tc_usec = 692276

this will generate: timestamp = 1565267482692276 this TIMESTAMP is not valid in MySQL and cannot be read from the time functions, while the segment related to tv.tv_sec = 1565267482 works perfectly.

(root@localhost) [(none)]>select FROM_UNIXTIME(1565267482);
+---------------------------+
| FROM_UNIXTIME(1565267482) |
+---------------------------+
| 2019-08-08 08:31:22       |
+---------------------------+

(root@localhost) [(none)]>select FROM_UNIXTIME(1565267482692276);
+---------------------------------+
| FROM_UNIXTIME(1565267482692276) |
+---------------------------------+
| NULL                            |
+---------------------------------+

this because the timestamp with microsecond is formatted differently in MySQL : PERSIST_code = 1565267482692276 MySQL = 1565267482.692276 If I run: select FROM_UNIXTIME(1565267482.692276); I get the right result:

+----------------------------------+
| FROM_UNIXTIME(1565267482.692276) |
+----------------------------------+
| 2019-08-08 08:31:22.692276       |
+----------------------------------+

of course, I can use the trick:

select FROM_UNIXTIME(1565267482692276/1000000);
+-----------------------------------------+
| FROM_UNIXTIME(1565267482692276/1000000) |
+-----------------------------------------+
| 2019-08-08 08:31:22.6922                |
+-----------------------------------------+

Well that's all for the behind the scene info, keep in mind if you want to deal with the value coming from the Json file.

Conclusion

Sometimes the small things can be better than the HUGE shining things. I saw many times DBAs in trouble because they do not have this simple feature in MySQL, and many MySQL failing to start, or behave not as expected. Given that, I welcome PERSIST and I am sure that the people who manage thousands of servers, have different workloads and automation in place, will see this as a good thing as well.

References:

https://dev.mysql.com/doc/refman/8.0/en/persisted-system-variables.html
https://dev.mysql.com/doc/refman/8.0/en/date-and-time-functions.html#function_timestamp
https://lefred.be/content/where-does-my-mysql-configuration-variable-value-come-from/
https://lefred.be/content/what-configuration-settings-did-i-change-on-my-mysql-server/